
INDIRECT TAXUPDATES
Goyal Rathi & Associates, Chartered Accountants
Overview
This Week at a Glance
Important Case Laws
A DGGI arrest upheld and the Section 6(2)(b) parallel-proceedings bar clarified (Karnataka HC); ITC restored under the extended Section 16(5) window (Madras HC); an IGST export refund to be processed under Rule 96 despite a Section 149 rejection (Gujarat HC); refund proceedings built on the omitted Rule 89(4B) held to have lapsed (Gujarat HC); an SCN posted under the wrong ‘Additional Notices’ tab held to be invalid service under Section 169 (Himachal Pradesh HC); High Court condonation of a time-barred cancellation appeal under Article 226 (Karnataka HC); and a Customs areca-nut seizure quashed for want of ‘reasons to believe’ under Section 110 (Gauhati HC).
7 rulings
Customs — Notifications, Circulars & Instructions
CBIC’s three-notification package dated 8th July 2026 — Nos. 25, 26 & 27/2026-Customs — extends customs-duty exemptions and concessions to display-assembly inputs, wireless-charging components and lithium-ion cell manufacturing machinery, each up to 31st March 2029, deepening the push for domestic electronics and EV-battery manufacturing.
3 notifications
Indirect Tax Updates · 5th–11th July 2026
Important Case Laws · GST
Case 1 of 7
Shri Mohammed Kamran S v. Senior Intelligence Officer, DGGI, Bengaluru
Petition dismissed
Karnataka High Court — 2026 (7) TMI 581 (Kar.) — W.P. No. 38771 of 2025 (GM-RES), dt. 07.07.2026
Intelligence-based GST enforcement may be pursued by either the Central or State administration; a transferred inquiry does not offend the Section 6(2)(b) bar, and an arrest under Section 69 is valid where the written grounds are served, acknowledged and backed by material.
Facts. The petitioner, proprietor of M/s M.K. Traders dealing in iron and steel scrap, was first under State GST enforcement (notice dated 17.06.2025) for transactions with three suppliers. During that inquiry DGGI (Central), acting on BIFA-generated intelligence of fake ITC of about ₹21.11 crore availed and passed on without actual supply, searched his premises under Section 67 on 10.09.2025; the search was obstructed and evidence allegedly destroyed. He was arrested on 16.09.2025 under Section 69(1) for an offence under Section 132(1)(c), and sought quashing of the criminal proceedings and a declaration that the arrest was illegal.
Ruling. Applying the Supreme Court’s decision in Armour Security, the Court held the Section 6(2)(b) bar is attracted only where two authorities proceed on the same subject-matter; ‘initiation of proceedings’ means issuance of an SCN, and summons, search and seizure do not qualify. As the State inquiry had been transferred to DGGI, the parallel-proceedings plea failed. On the arrest, following Prabir Purkayastha, Radhika Agarwal and Instruction No. 01/2025-GST, the Court found the grounds of arrest were furnished in writing, acknowledged, and supported by material showing non-cooperation and destruction of evidence; the arrest was lawful and the petition was dismissed.
Our Take. A timely reaffirmation of the Armour Security ‘same subject-matter’ test — a matter handed over from State to Central authorities is not barred parallel action. For clients under investigation, insist that the written grounds of arrest be furnished and acknowledged, and preserve digital evidence; obstruction of a search materially weakens any later challenge to the arrest.
Important Case Laws · GST
Case 2 of 7
Tvl. Alpha Tech v. Deputy Commercial Tax Officer, Chennai
Order set aside
Madras High Court — (2026) 44 Centax 20 (Mad.) — W.P. No. 20859 of 2026, dt. 11.06.2026
ITC cannot be denied merely for belated filing of returns where the returns fall within the extended window under the retrospectively-inserted Section 16(5); delay alone, absent any other ground, is not a valid basis for rejection.
Facts. The petitioner had availed input tax credit but filed its GST returns beyond the original statutory timeline, and the department rejected the ITC solely on the ground of delayed filing, invoking no other ground in the impugned order. Section 16(5) was subsequently inserted, extending the time limit for availing ITC linked to the return due dates, and the petitioner’s returns fell within this extended period. The petitioner challenged the denial as untenable in the light of the amendment.
Ruling. The Court noted that the statutory window for availing ITC had been enlarged by the insertion of Section 16(5), and that the petitioner had complied within that extended period. Since the only ground for denial was delay, and that delay stood cured by the amendment, rejection of ITC could not be sustained. The Government Counsel accepted notice and conceded the legal position. The impugned order denying ITC was accordingly set aside and the writ petition disposed of.
Our Take. Section 16(5) is a powerful shield for FY 2017-18 to 2020-21 credit denied purely for a late GSTR-3B. Screen every ITC-reversal order and pending appeal for this ground; where the sole basis is limitation under Section 16(4), press for relief and, if the demand is already confirmed, pursue rectification or appeal leveraging the retrospective cure.
Important Case Laws · GST
Case 3 of 7
Agriex & Anr. v. Union of India & Anr.
Refund directed
Gujarat High Court — 2026 (7) TMI 577 (Guj.) — R/Special Civil Application No. 5623 of 2024, dt. 02.07.2026
A refund of IGST paid on genuine exports must be examined under the GST refund framework in Rule 96; a rejection resting only on Section 149 of the Customs Act cannot foreclose the GST refund where none of the Rule 96(4) withholding conditions is attracted.
Facts. On 15.12.2023 the petitioner sought refund of IGST of ₹1,63,70,582 paid on exports of pre-packaged and labelled rice (Chapter Heading 1006) covered by shipping bills for the period 08.05.2023 to 17.07.2023, with an alternative prayer to amend the shipping bills from ‘LUT’ to ‘IGST paid’ under Section 149 of the Customs Act. By order dated 22.02.2024 the Customs authority rejected the application solely under Section 149, holding that no documentary evidence existed at the time of export, and did not deal with the primary prayer for refund of IGST.
Ruling. The Court held that the exports were undisputed and the application had specifically sought release of IGST paid on the exported goods; the rejection had proceeded only under Section 149 and failed to examine the claim under Rule 96 of the CGST Rules. As the case did not fall within any of the three withholding situations in Rule 96(4) and the goods were covered by Notification No. 1/2017-Integrated Tax (Rate), the refund had to be processed under the GST mechanism, following Amit Cotton Industries. Without deciding the Section 149 amendment issue, it directed the respondents to process the refund and kept the matter pending for a consequential order.
Our Take. Useful for exporters whose IGST refund is stuck on a shipping-bill mismatch (LUT vs. IGST-paid). Frame the claim squarely under Rule 96 read with Amit Cotton Industries; a Customs officer’s refusal to amend under Section 149 does not extinguish a substantive GST refund where no Rule 96(4) bar applies.
Important Case Laws · GST
Case 4 of 7
Alstom Transport India Limited v. Union of India & Ors.
Quashed / Refund directed
Gujarat High Court — 2026 (7) TMI 576 (Guj.) — R/Special Civil Application No. 3036 of 2025, dt. 02.07.2026
The omission of Rule 89(4B) by Notification No. 20/2024-Central Tax without a saving clause applies to all pending and unfinalised proceedings, which are not ‘transactions past and closed’; any adjudication founded on the omitted rule cannot survive.
Facts. The petitioner challenged a show-cause notice and the Order-in-Original dated 29.04.2025 which sought to deny refund by invoking Rule 89(4B) of the CGST Rules. Rule 89(4B) had been omitted by Notification No. 20/2024-Central Tax dated 08.10.2024 without any saving clause. The issue was treated as no longer res integra in the light of the Gujarat High Court’s decision in JJ Plastalloy Private Limited and connected matters dealing with the analogous omission of Rule 96(10).
Ruling. Following its earlier decisions and the Bombay High Court in Hikal Limited, the Court held that omission of a rule without a saving clause, and without the benefit of Section 6 of the General Clauses Act, obliterates the provision, so that all pending proceedings — undisposed notices and even orders passed before 08.10.2024 but not finalised due to appeals or challenges — do not constitute ‘transactions past and closed’ and stand lapsed. As the GSTAT was not yet constituted, the impugned orders had not attained finality. The SCN and Order-in-Original were quashed and the refund directed to be processed in accordance with law.
Our Take. A strong precedent to reopen refund denials built on Rule 89(4B) or the analogous Rule 96(10). Where the founding rule stood omitted without a saving clause and the demand has not attained finality, argue that the proceedings have lapsed — do not let the department treat pending, unfinalised matters as closed.
Important Case Laws · GST
Case 5 of 7
Alder Crafts v. State of Himachal Pradesh & Others
Order quashed
Himachal Pradesh High Court — 2026 (7) TMI 574 (H.P.) — CWP No. 15378 of 2025, dt. 02.07.2026
Uploading a show-cause notice under the wrong portal head — ‘Additional Notices’ instead of ‘Notices and Orders’ — is not valid service under Section 169; the defect vitiates the ensuing ex parte order and any consequential recovery.
Facts. A show-cause notice dated 25.09.2023 was uploaded on the GST portal under the head ‘Additional Notices’ rather than the prescribed head ‘Notices and Orders’. The petitioner did not become aware of it and was proceeded against ex parte; an adjudication order dated 29.12.2023 was passed, followed by a recovery notice dated 11.08.2025. The petitioner contended that it never had a fair opportunity to respond and that the notice and order were non-speaking.
Ruling. As it was undisputed that the notice had been uploaded under ‘Additional Notices’ and not under ‘Notices and Orders’, the Court held there was no proper or effective service under Section 169. Once the foundational notice was not duly served, the petitioner stood denied a fair opportunity and the ex parte adjudication could not be sustained; the recovery notice, being founded on the invalid order, was equally unsustainable. The notice, order and recovery notice were quashed, with liberty to the authority to issue a fresh notice on or before 31.07.2026, limitation not to bar such notice.
Our Take. One of the most practically useful grounds available today — the ‘Additional Notices’ tab defect. Check the exact portal head under which any SCN was posted; where it was buried under ‘Additional Notices’, plead defective service under Section 169 to have the ex parte demand and recovery set aside, subject to a fresh, properly-served notice.
Important Case Laws · GST
Case 6 of 7
Jai Hind Enterprises v. Assistant Commissioner of Commercial Taxes
Allowed partly
Karnataka High Court, Dharwad Bench — (2026) 44 Centax 11 (Kar.) — W.P. No. 107549 of 2024 (T-RES), dt. 21.01.2025
While the GST Appellate Authority cannot condone delay beyond the limit under Section 107, the High Court under Article 226 may condone such delay in genuinely compelling circumstances and permit a belated appeal to be heard on merits.
Facts. The petitioner, a sole proprietor, obtained GST registration on 28.06.2023 and then defaulted in filing returns for over six months. A cancellation show-cause notice (05.02.2024) and a defaulter notice (25.02.2024) drew no reply, and registration was cancelled by order dated 02.04.2024. The petitioner approached the High Court under Article 226 on 04.12.2024 — well beyond the 30-day appeal window under Section 107 — explaining that his mother’s terminal illness and death had caused the delay in filing returns and in preferring an appeal.
Ruling. The Court accepted that although the Appellate Authority has no power to condone delay under Section 107, it could exercise Article 226 jurisdiction to condone delay in compelling circumstances, as recognised in Kolapudi Enoch Washington and Nagson & Co. The explanation based on the terminal illness and demise of the petitioner’s mother was accepted as sufficient cause. The petition succeeded in part: the petitioner was permitted to file an appeal within four weeks, to be decided on merits without rejection on limitation, the benefit to lapse if not availed within that window.
Our Take. A pragmatic route where a registration-cancellation appeal is hopelessly time-barred before the Appellate Authority. Marshal documentary proof of the genuine cause (medical records, death certificate) and move the High Court under Article 226 — but act promptly, as the relief is conditional on filing within the short window the Court fixes.
Important Case Laws · Customs
Case 7 of 7
Aliya Enterprise v. Commissioner of Customs (Preventive), Shillong
Seizure quashed
Gauhati High Court — (2026) 44 Centax 1 (Gau.) — W.P.(C) No. 2272 of 2026, dt. 19.06.2026
A Customs seizure under Section 110 requires ‘reasons to believe’ grounded in material with a rational, live-link nexus to foreign origin; a bare suspicion of smuggling, unsupported by any evidence of foreign origin, is jurisdictionally invalid where goods move under a valid GST invoice and e-way bill.
Facts. The petitioner traded 17,200 kgs of Assam-dried areca nuts sold under a GST invoice for ₹33.81 lakhs. The truck carrying the goods from Hailakandi to Rupohihat (Nagaon) was intercepted at Karimganj and seized on 02.12.2025 by the Badarpur Customs authorities, alleging illegal import from Myanmar without licit import documents. Provisional release was refused on 12.02.2026 on the belief that the areca nuts were of Myanmar origin; samples were tested and found fit for human consumption, but no report or contemporaneous material established foreign origin, while the records carried a valid tax invoice, GST payment and e-way bill.
Ruling. Relying on Lakhmani Mewal Das, Charan Das Malhotra and Radhika Agarwal, the Court held that the power to seize under Section 110 requires ‘reasons to believe’ having a rational connection or live link with material — a higher threshold than mere suspicion. Confiscation under Section 111 applies only to goods brought from outside India; absent any material indicating foreign origin, the statutory precondition failed, while domestic sale and movement stood evidenced by invoice, GST payment and e-way bill. The seizure was held to be without jurisdiction, quashed and set aside, and release of the areca nuts and the truck was directed unless fresh material emerged.
Our Take. Directly relevant to North-East areca-nut and betel-nut seizures. Where the goods travel on a valid GST invoice and e-way bill and the department has no test report or evidence of foreign origin, the ‘reasons to believe’ under Section 110 are absent — press for provisional release and quashing, anchoring the argument on Radhika Agarwal.
Customs · Notifications, Circulars & Instructions
CBIC — Duty Relief to Boost Domestic Electronics & Battery Manufacturing
Notification Nos. 25/2026-Customs, 26/2026-Customs & 27/2026-Customs, all dated 8th July 2026
Notifications
Each effective up to 31st March 2029
On 8th July 2026 the CBIC issued a package of three Customs notifications extending basic-customs-duty exemptions and concessions to inputs and capital goods for high-value electronics and battery manufacturing, each valid up to 31st March 2029:
- No. 25/2026-Customs exempts customs duty on imported components for display assemblies used in automotive, medical and industrial applications — including display cells, flexible printed circuit assemblies, backlight units, frames and anisotropic conductive film.
- No. 26/2026-Customs provides duty relief on electronic components used to manufacture wireless charging modules for smartphones — nano-crystalline assemblies, E-shields, PET liners, coils and magnets.
- No. 27/2026-Customs broadens concessional duty on machinery used in lithium-ion cell manufacturing across 85 equipment categories — spanning material mixing, electrode coating, cell assembly, welding, testing and supporting systems.
Our Take. These measures deepen the PLI-linked push for domestic electronics and EV-battery manufacturing. Clients importing the covered inputs or plant should re-map their BOM/HSN lines to the new concessional entries, revisit landed-cost and project-cost models up to 31.03.2029, and preserve end-use documentation — concessional customs entries typically carry IGCR (import of goods at concessional rate) conditions.
Indirect Tax Updates · 5th–11th July 2026

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Goyal Rathi & Associates, Chartered Accountants
Specialists in GST · Income Tax · Internal & Statutory Audit · MOOWR · GST Litigation
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